IL_5LZU_049

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_049 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3105

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5LZU|1|5|G|1425
5LZU|1|5|G|1426
5LZU|1|5|A|1427
5LZU|1|5|U|1428
5LZU|1|5|C|1429
*
5LZU|1|5|G|1455
5LZU|1|5|C|1456
5LZU|1|5|G|1457
5LZU|1|5|C|1458
5LZU|1|5|A|1459
5LZU|1|5|C|1460

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Q

eL18

Chain b

eL29