3D structure

PDB id
5LZU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with accommodated eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
GGAUC*GCGCAC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZU_049 not in the Motif Atlas
Geometric match to IL_4V9F_018
Geometric discrepancy: 0.3105
The information below is about IL_4V9F_018
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_97631.1
Basepair signature
cWW-L-R-L-R-L-tHS-cWW
Number of instances in this motif group
1

Unit IDs

5LZU|1|5|G|1425
5LZU|1|5|G|1426
5LZU|1|5|A|1427
5LZU|1|5|U|1428
5LZU|1|5|C|1429
*
5LZU|1|5|G|1455
5LZU|1|5|C|1456
5LZU|1|5|G|1457
5LZU|1|5|C|1458
5LZU|1|5|A|1459
5LZU|1|5|C|1460

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain Q
eL18
Chain b
eL29

Coloring options:


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