IL_5LZU_098

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

5LZU|1|5|G|2652

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_098 not in the Motif Atlas

Geometric match to IL_3NDB_004

Geometric discrepancy: 0.35

The information below is about IL_3NDB_004

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

5LZU|1|5|C|2651
5LZU|1|5|G|2652
5LZU|1|5|C|2653
*
5LZU|1|5|G|2681
5LZU|1|5|G|2682

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain g

eL34

Chain p

eL43