IL_5LZU_104

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

5LZU|1|5|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_104 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.0864

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

5LZU|1|5|A|2850
5LZU|1|5|G|2851
5LZU|1|5|U|2852
5LZU|1|5|C|2853
5LZU|1|5|G|2854
5LZU|1|5|G|2855
*
5LZU|1|5|C|3837
5LZU|1|5|U|3838
5LZU|1|5|G|3839
5LZU|1|5|U|3840

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain V

uL14