IL_5LZU_105

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

5LZU|1|5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_105 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.0838

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5LZU|1|5|C|2867
5LZU|1|5|G|2868
5LZU|1|5|U|2869
5LZU|1|5|A|2870
5LZU|1|5|A|2871
5LZU|1|5|C|2872
*
5LZU|1|5|G|2877
5LZU|1|5|G|2878
5LZU|1|5|A|2879
5LZU|1|5|U|2880
5LZU|1|5|A|2881
5LZU|1|5|A|2882
5LZU|1|5|G|2883

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

60s ribosomal protein l41

Chain p

eL43