IL_5LZU_116

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_116 not in the Motif Atlas

Geometric match to IL_4V9F_070

Geometric discrepancy: 0.1223

The information below is about IL_4V9F_070

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_22551.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

5LZU|1|5|G|3780
5LZU|1|5|C|3781
*
5LZU|1|5|G|3811
5LZU|1|5|C|3812
5LZU|1|5|A|3813
5LZU|1|5|U|3814

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain ii

Eukaryotic peptide chain release factor subunit 1

Chain n

60s ribosomal protein l41