IL_5LZU_117

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

5LZU|1|5|A|3785, 5LZU|1|5|C|3791, 5LZU|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_117 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.0877

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

5LZU|1|5|C|3781
5LZU|1|5|C|3782
5LZU|1|5|A|3783
5LZU|1|5|A|3784
5LZU|1|5|A|3785
5LZU|1|5|U|3786
5LZU|1|5|G|3787
5LZU|1|5|C|3788
5LZU|1|5|C|3789
5LZU|1|5|U|3790
5LZU|1|5|C|3791
5LZU|1|5|G|3792
*
5LZU|1|5|C|3808
5LZU|1|5|G|3809
5LZU|1|5|C|3810
5LZU|1|5|G|3811

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain ii

Eukaryotic peptide chain release factor subunit 1

Chain n

60s ribosomal protein l41