IL_5LZU_129

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

5LZU|1|5|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_129 not in the Motif Atlas

Geometric match to IL_5J7L_269

Geometric discrepancy: 0.2807

The information below is about IL_5J7L_269

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

5LZU|1|5|G|4347
5LZU|1|5|A|4348
5LZU|1|5|C|4349
5LZU|1|5|C|4350
*
5LZU|1|5|G|4364
5LZU|1|5|C|4365

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

eL13

Chain Q

eL18

Chain a

uL15

Chain o

eL42