3D structure

PDB id
5LZU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with accommodated eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
CUC*GUGAG
Length
8 nucleotides
Bulged bases
5LZU|1|5|G|4522, 5LZU|1|5|A|4523
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZU_136 not in the Motif Atlas
Geometric match to IL_5TBW_108
Geometric discrepancy: 0.0717
The information below is about IL_5TBW_108
Detailed Annotation
Isolated non-canonical cWW with bulges
Broad Annotation
Isolated non-canonical cWW with bulges
Motif group
IL_54650.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

5LZU|1|5|C|4456
5LZU|1|5|U|4457
5LZU|1|5|C|4458
*
5LZU|1|5|G|4520
5LZU|1|5|U|4521
5LZU|1|5|G|4522
5LZU|1|5|A|4523
5LZU|1|5|G|4524

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain B
uL3
Chain V
uL14
Chain ii
Eukaryotic peptide chain release factor subunit 1

Coloring options:


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