IL_5LZU_148

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

5LZU|1|5|U|4634, 5LZU|1|5|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_148 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.2631

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

5LZU|1|5|U|4632
5LZU|1|5|G|4633
5LZU|1|5|U|4634
5LZU|1|5|A|4635
5LZU|1|5|U|4636
5LZU|1|5|G|4637
*
5LZU|1|5|C|4662
5LZU|1|5|G|4663
5LZU|1|5|A|4664
5LZU|1|5|A|4665
5LZU|1|5|G|4666

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain W

eL24

Chain d

eL31