IL_5LZU_165

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_165 not in the Motif Atlas

Geometric match to IL_5TBW_135

Geometric discrepancy: 0.3113

The information below is about IL_5TBW_135

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

5LZU|1|5|A|5014
5LZU|1|5|G|5015
5LZU|1|5|A|5016
5LZU|1|5|G|5017
*
5LZU|1|5|C|5032
5LZU|1|5|G|5033
5LZU|1|5|A|5034
5LZU|1|5|U|5035

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain II

40S ribosomal protein S8

Chain R

eL19