IL_5LZU_196

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

5LZU|1|9|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_196 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.0872

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5LZU|1|9|G|411
5LZU|1|9|G|412
5LZU|1|9|G|413
*
5LZU|1|9|C|424
5LZU|1|9|G|425
5LZU|1|9|A|426
5LZU|1|9|U|427
5LZU|1|9|U|428
5LZU|1|9|C|429

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain JJ

Ribosomal protein S9 (Predicted)

Chain XX

uS12