IL_5LZU_232

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_232 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.087

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

5LZU|1|9|G|1168
5LZU|1|9|G|1169
5LZU|1|9|A|1170
5LZU|1|9|G|1171
5LZU|1|9|U|1172
5LZU|1|9|A|1173
5LZU|1|9|U|1174
5LZU|1|9|G|1175
*
5LZU|1|9|U|1186
5LZU|1|9|G|1187
5LZU|1|9|A|1188
5LZU|1|9|A|1189
5LZU|1|9|A|1190
5LZU|1|9|C|1191

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain XX

uS12

Chain n

60s ribosomal protein l41