IL_5LZU_248

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

5LZU|1|9|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_248 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.3352

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5LZU|1|9|C|1395
5LZU|1|9|A|1396
5LZU|1|9|U|1397
5LZU|1|9|G|1398
5LZU|1|9|C|1399
*
5LZU|1|9|G|1447
5LZU|1|9|A|1448
5LZU|1|9|G|1449
5LZU|1|9|G|1450

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain DD

uS3

Chain QQ

uS9

Chain RR

eS17

Chain UU

uS10

Chain gg

RACK1