IL_5LZU_249

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

5LZU|1|9|C|1403, 5LZU|1|9|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_249 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.136

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

5LZU|1|9|A|1402
5LZU|1|9|C|1403
5LZU|1|9|U|1404
5LZU|1|9|A|1405
*
5LZU|1|9|U|1441
5LZU|1|9|U|1442
5LZU|1|9|C|1443
5LZU|1|9|U|1444

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain QQ

uS9

Chain UU

uS10

Chain gg

RACK1