IL_5LZU_265

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_265 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.1766

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

5LZU|1|9|C|1742
5LZU|1|9|G|1743
5LZU|1|9|G|1744
5LZU|1|9|A|1745
5LZU|1|9|U|1746
*
5LZU|1|9|A|1788
5LZU|1|9|G|1789
5LZU|1|9|A|1790
5LZU|1|9|A|1791
5LZU|1|9|G|1792

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8

Chain W

eL24