IL_5LZU_277

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

5LZU|1|5|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_277 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.1757

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

5LZU|1|5|G|4405
5LZU|1|5|U|4406
5LZU|1|5|G|4407
*
5LZU|1|5|U|4435
5LZU|1|5|U|4436
5LZU|1|5|U|4437
5LZU|1|5|U|4438
5LZU|1|5|U|4439

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain I

uL16

Chain ii

Eukaryotic peptide chain release factor subunit 1