IL_8C3A_113

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

8C3A|1|1|U|2832

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8C3A|1|1|G|2800
8C3A|1|1|U|2801
8C3A|1|1|G|2802
*
8C3A|1|1|U|2830
8C3A|1|1|U|2831
8C3A|1|1|U|2832
8C3A|1|1|U|2833
8C3A|1|1|U|2834

Current chains

Chain 1

25S

Nearby chains

Chain k

60S ribosomal protein L3

Chain r

60S ribosomal protein L10