IL_5LZU_280

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

5LZU|1|5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_280 not in the Motif Atlas

Homologous match to IL_8P9A_348

Geometric discrepancy: 0.2414

The information below is about IL_8P9A_348

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

5LZU|1|5|A|4681
5LZU|1|5|U|4682
5LZU|1|5|U|4683
5LZU|1|5|A|4684
5LZU|1|5|U|4685
*
5LZU|1|5|A|4705
5LZU|1|5|G|4706
5LZU|1|5|A|4707
5LZU|1|5|A|4708
5LZU|1|5|U|4709

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40