IL_8P9A_348

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

8P9A|1|AR|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

8P9A|1|AR|A|3103
8P9A|1|AR|U|3104
8P9A|1|AR|U|3105
8P9A|1|AR|A|3106
8P9A|1|AR|U|3107
*
8P9A|1|AR|A|3127
8P9A|1|AR|G|3128
8P9A|1|AR|A|3129
8P9A|1|AR|A|3130
8P9A|1|AR|U|3131

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CK

60S ribosomal protein L9-A

Chain CQ

60S ribosomal protein L16-A

Chain DO

Ubiquitin-60S ribosomal protein L40