IL_5LZU_284

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAGC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_284 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2557

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5LZU|1|9|G|692
5LZU|1|9|A|693
5LZU|1|9|G|694
5LZU|1|9|C|695
*
5LZU|1|9|G|731
5LZU|1|9|U|732
5LZU|1|9|C|733
5LZU|1|9|C|734

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain HH

eS7

Chain WW

uS8