IL_5LZV_031

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CUCCC*GUCGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZV_031 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2401

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5LZV|1|5|C|519
5LZV|1|5|U|520
5LZV|1|5|C|521
5LZV|1|5|C|522
5LZV|1|5|C|523
*
5LZV|1|5|G|638
5LZV|1|5|U|639
5LZV|1|5|C|640
5LZV|1|5|G|641
5LZV|1|5|G|642

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

eL13