IL_5LZV_102

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

5LZV|1|5|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZV_102 not in the Motif Atlas

Geometric match to IL_4V9F_062

Geometric discrepancy: 0.1105

The information below is about IL_4V9F_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

5LZV|1|5|A|2850
5LZV|1|5|G|2851
5LZV|1|5|U|2852
5LZV|1|5|C|2853
5LZV|1|5|G|2854
5LZV|1|5|G|2855
*
5LZV|1|5|C|3837
5LZV|1|5|U|3838
5LZV|1|5|G|3839
5LZV|1|5|U|3840

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain V

uL14