IL_5LZV_115

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

5LZV|1|5|A|3785, 5LZV|1|5|C|3791, 5LZV|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZV_115 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.0922

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

5LZV|1|5|C|3781
5LZV|1|5|C|3782
5LZV|1|5|A|3783
5LZV|1|5|A|3784
5LZV|1|5|A|3785
5LZV|1|5|U|3786
5LZV|1|5|G|3787
5LZV|1|5|C|3788
5LZV|1|5|C|3789
5LZV|1|5|U|3790
5LZV|1|5|C|3791
5LZV|1|5|G|3792
*
5LZV|1|5|C|3808
5LZV|1|5|G|3809
5LZV|1|5|C|3810
5LZV|1|5|G|3811

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain ii

eRF1(AAQ)

Chain n

eL41