IL_5LZV_200

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZV_200 not in the Motif Atlas

Geometric match to IL_3TD0_002

Geometric discrepancy: 0.3872

The information below is about IL_3TD0_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

5LZV|1|9|G|535
5LZV|1|9|A|536
5LZV|1|9|C|537
*
5LZV|1|9|G|546
5LZV|1|9|G|547
5LZV|1|9|C|548
5LZV|1|9|C|549

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain ee

eS30