IL_5LZV_222

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

5LZV|1|9|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZV_222 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.126

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

5LZV|1|9|G|952
5LZV|1|9|C|953
5LZV|1|9|U|954
5LZV|1|9|A|955
5LZV|1|9|G|956
*
5LZV|1|9|C|967
5LZV|1|9|U|968
5LZV|1|9|U|969
5LZV|1|9|G|970
5LZV|1|9|G|971
5LZV|1|9|A|972
5LZV|1|9|C|973
5LZV|1|9|C|974

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain BB

eS1

Chain OO

uS11