IL_5LZV_245

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

5LZV|1|9|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZV_245 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3274

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5LZV|1|9|C|1395
5LZV|1|9|A|1396
5LZV|1|9|U|1397
5LZV|1|9|G|1398
5LZV|1|9|C|1399
*
5LZV|1|9|G|1447
5LZV|1|9|A|1448
5LZV|1|9|G|1449
5LZV|1|9|G|1450

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain DD

uS3

Chain QQ

uS9

Chain RR

eS17

Chain UU

uS10

Chain gg

RACK1