IL_5LZV_246

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

5LZV|1|9|C|1403, 5LZV|1|9|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZV_246 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1531

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

5LZV|1|9|A|1402
5LZV|1|9|C|1403
5LZV|1|9|U|1404
5LZV|1|9|A|1405
*
5LZV|1|9|U|1441
5LZV|1|9|U|1442
5LZV|1|9|C|1443
5LZV|1|9|U|1444

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain QQ

uS9

Chain UU

uS10

Chain gg

RACK1