IL_5LZW_095

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZW_095 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.1692

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

5LZW|1|5|C|2589
5LZW|1|5|G|2590
5LZW|1|5|A|2591
5LZW|1|5|U|2592
5LZW|1|5|C|2593
*
5LZW|1|5|G|2752
5LZW|1|5|G|2753
5LZW|1|5|G|2754
5LZW|1|5|A|2755
5LZW|1|5|G|2756

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain Z

eL27

Chain g

eL34