IL_5LZW_115
3D structure
- PDB id
- 5LZW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.53 Å
Loop
- Sequence
- UCAAAGU*AAUGAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LZW_115 not in the Motif Atlas
- Homologous match to IL_5TBW_088
- Geometric discrepancy: 0.1642
- The information below is about IL_5TBW_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5LZW|1|5|U|3715
5LZW|1|5|C|3716
5LZW|1|5|A|3717
5LZW|1|5|A|3718
5LZW|1|5|A|3719
5LZW|1|5|G|3720
5LZW|1|5|U|3721
*
5LZW|1|5|A|3732
5LZW|1|5|A|3733
5LZW|1|5|U|3734
5LZW|1|5|G|3735
5LZW|1|5|A|3736
5LZW|1|5|A|3737
5LZW|1|5|G|3738
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain A
- uL2
- Chain i
- eL36
- Chain o
- eL42
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