IL_5LZW_160

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

UUCG*CCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZW_160 not in the Motif Atlas

Homologous match to IL_8C3A_135

Geometric discrepancy: 0.1559

The information below is about IL_8C3A_135

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5LZW|1|5|U|4972
5LZW|1|5|U|4973
5LZW|1|5|C|4974
5LZW|1|5|G|4975
*
5LZW|1|5|C|4983
5LZW|1|5|C|4984
5LZW|1|5|U|4985
5LZW|1|5|G|4986

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain d

eL31