IL_5LZW_206

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZW_206 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.0963

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

5LZW|1|9|A|599
5LZW|1|9|G|600
5LZW|1|9|G|601
5LZW|1|9|G|602
5LZW|1|9|C|603
5LZW|1|9|A|604
5LZW|1|9|A|605
5LZW|1|9|G|606
*
5LZW|1|9|C|636
5LZW|1|9|U|637

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain CC

uS5

Chain JJ

uS4

Chain ee

eS30