IL_5LZW_226
3D structure
- PDB id
- 5LZW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.53 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 5LZW|1|9|G|970
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LZW_226 not in the Motif Atlas
- Homologous match to IL_4V88_434
- Geometric discrepancy: 0.1267
- The information below is about IL_4V88_434
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
5LZW|1|9|G|952
5LZW|1|9|C|953
5LZW|1|9|U|954
5LZW|1|9|A|955
5LZW|1|9|G|956
*
5LZW|1|9|C|967
5LZW|1|9|U|968
5LZW|1|9|U|969
5LZW|1|9|G|970
5LZW|1|9|G|971
5LZW|1|9|A|972
5LZW|1|9|C|973
5LZW|1|9|C|974
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BB
- eS1
- Chain OO
- uS11
Coloring options: