IL_5LZX_079
3D structure
- PDB id
- 5LZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 5LZX|1|5|C|1935, 5LZX|1|5|A|2041
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LZX_079 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1366
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5LZX|1|5|G|1933
5LZX|1|5|A|1934
5LZX|1|5|C|1935
5LZX|1|5|C|1936
5LZX|1|5|C|1937
5LZX|1|5|C|1938
5LZX|1|5|A|1939
5LZX|1|5|G|1940
5LZX|1|5|A|1941
5LZX|1|5|A|1942
5LZX|1|5|A|1943
5LZX|1|5|A|1944
*
5LZX|1|5|U|2038
5LZX|1|5|G|2039
5LZX|1|5|A|2040
5LZX|1|5|A|2041
5LZX|1|5|A|2042
5LZX|1|5|A|2043
5LZX|1|5|U|2044
5LZX|1|5|G|2045
5LZX|1|5|G|2046
5LZX|1|5|A|2047
5LZX|1|5|U|2048
5LZX|1|5|G|2049
5LZX|1|5|G|2050
5LZX|1|5|C|2051
5LZX|1|5|G|2052
5LZX|1|5|C|2053
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain B
- Ul3
- Chain I
- Ribosomal protein L10 (Predicted)
- Chain O
- uL13
- Chain f
- eL33
- Chain m
- eL40
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