IL_5LZX_117

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

5LZX|1|5|A|3785, 5LZX|1|5|C|3791, 5LZX|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZX_117 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1023

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

5LZX|1|5|C|3781
5LZX|1|5|C|3782
5LZX|1|5|A|3783
5LZX|1|5|A|3784
5LZX|1|5|A|3785
5LZX|1|5|U|3786
5LZX|1|5|G|3787
5LZX|1|5|C|3788
5LZX|1|5|C|3789
5LZX|1|5|U|3790
5LZX|1|5|C|3791
5LZX|1|5|G|3792
*
5LZX|1|5|C|3808
5LZX|1|5|G|3809
5LZX|1|5|C|3810
5LZX|1|5|G|3811

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41