IL_5LZX_150

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

5LZX|1|5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZX_150 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2625

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5LZX|1|5|G|4680
5LZX|1|5|A|4681
5LZX|1|5|U|4682
5LZX|1|5|U|4683
5LZX|1|5|A|4684
5LZX|1|5|U|4685
*
5LZX|1|5|A|4705
5LZX|1|5|G|4706
5LZX|1|5|A|4707
5LZX|1|5|A|4708
5LZX|1|5|U|4709
5LZX|1|5|C|4710

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40