IL_5LZX_175

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

5LZX|1|9|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZX_175 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3143

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5LZX|1|9|C|37
5LZX|1|9|A|38
5LZX|1|9|A|39
5LZX|1|9|A|40
*
5LZX|1|9|U|514
5LZX|1|9|G|515
5LZX|1|9|A|516
5LZX|1|9|C|517
5LZX|1|9|G|518

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain JJ

Ribosomal protein S9 (Predicted)

Chain YY

eS24