IL_5LZX_216
3D structure
- PDB id
- 5LZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LZX_216 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.2333
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5LZX|1|9|G|807
5LZX|1|9|A|808
5LZX|1|9|A|809
5LZX|1|9|A|810
5LZX|1|9|A|811
5LZX|1|9|A|812
5LZX|1|9|A|813
5LZX|1|9|U|814
5LZX|1|9|U|815
*
5LZX|1|9|A|849
5LZX|1|9|C|850
5LZX|1|9|C|851
5LZX|1|9|G|852
5LZX|1|9|C|853
5LZX|1|9|A|854
5LZX|1|9|G|855
5LZX|1|9|C|856
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain EE
- eS4
- Chain JJ
- Ribosomal protein S9 (Predicted)
- Chain LL
- uS17
- Chain WW
- uS8
Coloring options: