IL_5LZX_248

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

UA*UUA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZX_248 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.2666

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

5LZX|1|9|U|1400
5LZX|1|9|A|1401
*
5LZX|1|9|U|1444
5LZX|1|9|U|1445
5LZX|1|9|A|1446

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain QQ

uS9

Chain UU

uS10

Chain gg

RACK1