IL_5LZX_278

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZX_278 not in the Motif Atlas

Homologous match to IL_8P9A_305

Geometric discrepancy: 0.0608

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5LZX|1|5|G|2847
5LZX|1|5|G|2848
5LZX|1|5|A|2849
5LZX|1|5|A|2850
5LZX|1|5|G|2851
5LZX|1|5|U|2852
5LZX|1|5|C|2853
5LZX|1|5|G|2854
5LZX|1|5|G|2855
*
5LZX|1|5|C|3837
5LZX|1|5|U|3838
5LZX|1|5|G|3839
5LZX|1|5|U|3840
5LZX|1|5|C|3841

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ul3

Chain V

uL14