IL_5LZY_068

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

GGGGCC*GAUCUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZY_068 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3904

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

5LZY|1|5|G|1758
5LZY|1|5|G|1759
5LZY|1|5|G|1760
5LZY|1|5|G|1761
5LZY|1|5|C|1762
5LZY|1|5|C|1763
*
5LZY|1|5|G|1769
5LZY|1|5|A|1770
5LZY|1|5|U|1771
5LZY|1|5|C|1772
5LZY|1|5|U|1773
5LZY|1|5|C|1774

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain I

Ribosomal protein L10 (Predicted)