IL_5LZY_098

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

AAG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZY_098 not in the Motif Atlas

Homologous match to IL_5TBW_075

Geometric discrepancy: 0.1136

The information below is about IL_5TBW_075

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_54997.8

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

5LZY|1|5|A|2844
5LZY|1|5|A|2845
5LZY|1|5|G|2846
*
5LZY|1|5|C|3842
5LZY|1|5|C|3843
5LZY|1|5|U|3844

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain V

eL14

Chain W

eL24