IL_5LZY_178

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZY_178 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.1659

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

5LZY|1|9|U|116
5LZY|1|9|C|117
5LZY|1|9|C|118
5LZY|1|9|U|119
5LZY|1|9|U|120
5LZY|1|9|U|121
*
5LZY|1|9|A|343
5LZY|1|9|U|344
5LZY|1|9|U|345
5LZY|1|9|C|346
5LZY|1|9|G|347

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain II

eS8