IL_5LZY_199

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

5LZY|1|9|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZY_199 not in the Motif Atlas

Homologous match to IL_4V88_414

Geometric discrepancy: 0.4641

The information below is about IL_4V88_414

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5LZY|1|9|G|606
5LZY|1|9|U|607
5LZY|1|9|C|608
*
5LZY|1|9|G|635
5LZY|1|9|C|636

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain DD

uS3

Chain JJ

Ribosomal protein S9 (Predicted)

Chain ee

eS30