IL_5LZY_248

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZY_248 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.0951

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

5LZY|1|9|G|1604
5LZY|1|9|G|1605
5LZY|1|9|G|1606
5LZY|1|9|A|1607
5LZY|1|9|U|1608
5LZY|1|9|C|1609
5LZY|1|9|G|1610
*
5LZY|1|9|C|1629
5LZY|1|9|A|1630
5LZY|1|9|U|1631
5LZY|1|9|G|1632
5LZY|1|9|A|1633
5LZY|1|9|A|1634
5LZY|1|9|C|1635

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain FF

uS7

Chain SS

uS13

Chain TT

eS19