IL_5LZY_277

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CGGCC*GAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZY_277 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.2779

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

5LZY|1|9|C|927
5LZY|1|9|G|928
5LZY|1|9|G|929
5LZY|1|9|C|930
5LZY|1|9|C|931
*
5LZY|1|9|G|1010
5LZY|1|9|A|1011
5LZY|1|9|A|1012
5LZY|1|9|U|1013
5LZY|1|9|G|1014

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain BB

40S ribosomal protein S3a

Chain NN

uS15

Chain bb

40S ribosomal protein S27