IL_5LZZ_108
3D structure
- PDB id
- 5LZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 5LZZ|1|5|A|3663, 5LZZ|1|5|U|3679, 5LZZ|1|5|C|3683
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LZZ_108 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.0774
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5LZZ|1|5|C|3660
5LZZ|1|5|G|3661
5LZZ|1|5|A|3662
5LZZ|1|5|A|3663
5LZZ|1|5|G|3664
5LZZ|1|5|G|3665
*
5LZZ|1|5|U|3677
5LZZ|1|5|G|3678
5LZZ|1|5|U|3679
5LZZ|1|5|U|3680
5LZZ|1|5|G|3681
5LZZ|1|5|A|3682
5LZZ|1|5|C|3683
5LZZ|1|5|G|3684
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- uL2
- Chain p
- eL43
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