IL_5LZZ_152

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GUCCC*GGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZZ_152 not in the Motif Atlas

Geometric match to IL_2O3V_003

Geometric discrepancy: 0.3686

The information below is about IL_2O3V_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34618.1

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

4

Unit IDs

5LZZ|1|5|G|4769
5LZZ|1|5|U|4770
5LZZ|1|5|C|4771
5LZZ|1|5|C|4772
5LZZ|1|5|C|4773
*
5LZZ|1|5|G|4862
5LZZ|1|5|G|4863
5LZZ|1|5|U|4864
5LZZ|1|5|C|4865

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain O

uL13