IL_5LZZ_257

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZZ_257 not in the Motif Atlas

Homologous match to IL_4V88_468

Geometric discrepancy: 0.0873

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

5LZZ|1|9|C|1717
5LZZ|1|9|G|1718
5LZZ|1|9|A|1719
5LZZ|1|9|U|1720
*
5LZZ|1|9|A|1813
5LZZ|1|9|G|1814
5LZZ|1|9|A|1815
5LZZ|1|9|G|1816

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain ii

Protein pelota homolog

Chain n

eL41