IL_5M0J_002
3D structure
- PDB id
- 5M0J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the cytoplasmic complex with She2p, She3p, and the ASH1 mRNA E3-localization element
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- AACUGAAU*ACAUU
- Length
- 13 nucleotides
- Bulged bases
- 5M0J|1|F|U|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- Reverse turn
- Broad Annotation
- No text annotation
- Motif group
- IL_97697.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
5M0J|1|F|A|4
5M0J|1|F|A|5
5M0J|1|F|C|6
5M0J|1|F|U|7
5M0J|1|F|G|8
5M0J|1|F|A|9
5M0J|1|F|A|10
5M0J|1|F|U|11
*
5M0J|1|F|A|18
5M0J|1|F|C|19
5M0J|1|F|A|20
5M0J|1|F|U|21
5M0J|1|F|U|22
Current chains
- Chain F
- ASH1 E3 (28 nt-loop)
Nearby chains
- Chain C
- SWI5-dependent HO expression protein 2,SWI5-dependent HO expression protein 3
- Chain D
- SWI5-dependent HO expression protein 2,SWI5-dependent HO expression protein 3
- Chain J
- SWI5-dependent HO expression protein 2,SWI5-dependent HO expression protein 3
Coloring options: