Motif IL_42992.1 Version IL_42992.1 of this group appears in releases 4.1 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 1-11 | 6-9 | 7-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5M0J_001 | 5M0J | 0.0600 | 2 | Reverse turn | E | ASH1 E3 (28 nt-loop) | A | 4 | A | 5 | U | 7 | G | 8 | A | 9 | A | 10 | U | 11 | * | A | 18 | C | 19 | A | 20 | U | 22 | cWW | ncWW | cWW |
| 2 | IL_5M0J_002 | 5M0J | 0.0000 | 2 | Reverse turn | F | ASH1 E3 (28 nt-loop) | A | 4 | A | 5 | U | 7 | G | 8 | A | 9 | A | 10 | U | 11 | * | A | 18 | C | 19 | A | 20 | U | 22 | cWW | cWW | |
| 3 | IL_5M0I_002 | 5M0I | 0.7994 | 2 | Reverse turn | F | ASH1-E3 element, RNA (28-MER) | A | 4 | A | 5 | C | 6 | G | 8 | A | 9 | A | 10 | U | 11 | * | A | 18 | C | 19 | A | 20 | U | 22 | cWW | ncWW | cWW |
| 4 | IL_5M0I_001 | 5M0I | 0.8036 | 2 | Reverse turn | E | ASH1-E3 element, RNA (28-MER) | A | 4 | A | 5 | C | 6 | G | 8 | A | 9 | A | 10 | U | 11 | * | A | 18 | C | 19 | A | 20 | U | 22 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AACUGAAU*ACAUU | 4 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACUGAA*CAU | 4 |
- Annotations
-
- Reverse turn (4)
- Basepair signature
- cWW-L-R-L-R-L-cWW-L-L
- Heat map statistics
- Min 0.05 | Avg 0.42 | Max 0.81
Coloring options: